Genome Meta Information: Veillonella parvula AF04-47 (GCA_003465965.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003465965.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula AF04-47 | ||
| Strain or Isolate | AF04-47 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_A |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,140,208 (bp) | ||
| GC Percentage | 38.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/465/965/GCA_003465965.1_ASM346596v1 | ||
| CDS | 1919 | ||
| Genes | 1986 | ||
| mRNA | 1986 | ||
| misc RNA | 23 | ||
| rRNA | 5 | ||
| tRNA | 38 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.36 % | ||
| CheckM Completeness | 97.54 % | ||
| CheckM Contamination | 1.44 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM346596v1 |
| GenBank Assembly Accession | GCA_003465965.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003465965.1 [NCBI] |
| BioSample | SAMN09734183 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:06.313 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QSBH01 |
| NCBI TaxID | 29466 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
