Genome Meta Information: Agathobacter rectalis AF38-24 (GCA_003474615.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003474615.1 | ||
| HOMD Taxon-ID | HMT-960 | ||
| Species Name (in use by HOMD) | Agathobacter rectalis | ||
| Organism Name (as deposited) | HMT-960 Agathobacter rectalis AF38-24 | ||
| Strain or Isolate | AF38-24 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter; s__Agathobacter rectalis |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,096,310 (bp) | ||
| GC Percentage | 41.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/615/GCA_003474615.1_ASM347461v1 | ||
| CDS | 2893 | ||
| Genes | 3016 | ||
| mRNA | 3016 | ||
| misc RNA | 64 | ||
| rRNA | 2 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.97 % | ||
| CheckM Completeness | 99.52 % | ||
| CheckM Contamination | 0.24 % | ||
| CheckM2 Completeness | 99.98 % | ||
| CheckM2 Contamination | 0.02 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM347461v1 |
| GenBank Assembly Accession | GCA_003474615.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003474615.1 [NCBI] |
| BioSample | SAMN09734675 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:13.710 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QRON01 |
| NCBI TaxID | 39491 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
