Genome Meta Information: Veillonella atypica AF36-15BH (GCA_003474825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003474825.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica AF36-15BH | ||
| Strain or Isolate | AF36-15BH | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,992,862 (bp) | ||
| GC Percentage | 38.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/825/GCA_003474825.1_ASM347482v1 | ||
| CDS | 1818 | ||
| Genes | 1891 | ||
| mRNA | 1891 | ||
| misc RNA | 19 | ||
| rRNA | 6 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.41 % | ||
| CheckM Completeness | 96.37 % | ||
| CheckM Contamination | 1.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM347482v1 |
| GenBank Assembly Accession | GCA_003474825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003474825.1 [NCBI] |
| BioSample | SAMN09734641 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:13.213 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QRPF01 |
| NCBI TaxID | 39777 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
