Genome Meta Information: Cronobacter sakazakii CS-931 (GCA_003516125.3)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003516125.3 | ||
| HOMD Taxon-ID | HMT-0753 | ||
| Species Name (in use by HOMD) | Cronobacter sakazakii | ||
| Organism Name (as deposited) | HMT-753 Cronobacter sakazakii CS-931 | ||
| Strain or Isolate | CS-931 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter; s__Cronobacter sakazakii |
||
| Sequencing Technology | PacBio RSII; Illumina MiSeq | ||
| Genome Coverage | 651.04 | ||
| Contigs |
|
||
| Total Sequence Length | 4,437,993 (bp) | ||
| GC Percentage | 56.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/516/125/GCA_003516125.3_ASM351612v3 | ||
| CDS | 4059 | ||
| Genes | 4277 | ||
| mRNA | 4277 | ||
| misc RNA | 110 | ||
| rRNA | 22 | ||
| tRNA | 85 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.91 % | ||
| CheckM Completeness | 98.06 % | ||
| CheckM Contamination | 1.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM351612v3 |
| GenBank Assembly Accession | GCA_003516125.3 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003516125.1 [NCBI] |
| BioSample | SAMN07540307 [NCBI] |
| BioProject | PRJNA399551 [NCBI] |
| Submitter | Center for Genomic Sciences, National Autonomous University of Mexico (UNAM) |
| Submission Date | 2017-08-22T19:36:03.246 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28141 |
| Isolation Source | feces |
| Geo Location | Mexico: Mexico City |
