Genome Meta Information: Fusobacterium polymorphum UBA8871 (GCA_003516445.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003516445.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum UBA8871 | ||
| Strain or Isolate | UBA8871 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 16.17 | ||
| Contigs |
|
||
| Total Sequence Length | 2,331,541 (bp) | ||
| GC Percentage | 26.82 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/516/445/GCA_003516445.1_ASM351644v1 | ||
| CDS | 2279 | ||
| Genes | 2330 | ||
| mRNA | 2330 | ||
| misc RNA | 22 | ||
| rRNA | 1 | ||
| tRNA | 27 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 94.13 % | ||
| CheckM Contamination | 0.27 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM351644v1 |
| GenBank Assembly Accession | GCA_003516445.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003516445.1 [NCBI] |
| BioSample | SAMN08019567 [NCBI] |
| BioProject | PRJNA417962 [NCBI] |
| Submitter | University of Queensland |
| Submission Date | 2017-11-13T20:27:09.487 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | DPCP01 |
| NCBI TaxID | 68766 |
| Isolation Source | metagenome |
| Geo Location | not applicable |
