Genome Meta Information: Veillonella parvula KHUD_VP2 (GCA_003584215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003584215.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula KHUD_VP2 | ||
| Strain or Isolate | KHUD_VP2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella parvula_E |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 942.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,144,191 (bp) | ||
| GC Percentage | 38.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/584/215/GCA_003584215.1_ASM358421v1 | ||
| CDS | 1917 | ||
| Genes | 1981 | ||
| mRNA | 1981 | ||
| misc RNA | 20 | ||
| rRNA | 4 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.52 % | ||
| CheckM Completeness | 97.49 % | ||
| CheckM Contamination | 1.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM358421v1 |
| GenBank Assembly Accession | GCA_003584215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003584215.1 [NCBI] |
| BioSample | SAMN09946803 [NCBI] |
| BioProject | PRJNA488979 [NCBI] |
| Submitter | Kyung Hee University |
| Submission Date | 2018-09-03T03:37:05.981 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QYAA01 |
| NCBI TaxID | 29466 |
| Isolation Source | |
| Geo Location | South Korea: Seoul |
