Genome Meta Information: Lachnoanaerobaculum umeaense DSM 23576 = CCUG 58757 (GCA_003589745.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003589745.1 | ||
| HOMD Taxon-ID | HMT-0107 | ||
| Species Name (in use by HOMD) | Lachnoanaerobaculum umeaense | ||
| Organism Name (as deposited) | HMT-107 Lachnoanaerobaculum umeaense DSM 23576 = CCUG 58757 | ||
| Strain or Isolate | DSM 23576 = CCUG 58757 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum; s__Lachnoanaerobaculum umeaense |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 714.7 | ||
| Contigs |
|
||
| Total Sequence Length | 2,810,441 (bp) | ||
| GC Percentage | 35.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/589/745/GCA_003589745.1_ASM358974v1 | ||
| CDS | 2570 | ||
| Genes | 2643 | ||
| mRNA | 0 | ||
| misc RNA | 12 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.38 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM358974v1 |
| GenBank Assembly Accession | GCA_003589745.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003589745.1 [NCBI] |
| BioSample | SAMN10059125 [NCBI] |
| BioProject | PRJNA490792 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-09-14T00:58:05.970 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 617123 |
| Isolation Source | biopsy from the small intestine of a child with coeliac disease |
| Geo Location | Sweden: Umea |
