Taxon Table | Genome Table
Genome Meta Information:
Streptococcus
pseudopneumoniae
Spain9880 (GCA_003599935.1)
| HOMD Genome-ID |
GCA_003599935.1
|
| HOMD Taxon-ID |
HMT-0425
|
| Species Name (in use by HOMD) |
Streptococcus pseudopneumoniae
|
| Organism Name (as deposited) |
HMT-425 Streptococcus pseudopneumoniae Spain9880
|
| Strain or Isolate |
Spain9880
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;
s__Streptococcus pseudopneumoniae |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
101
|
| Contigs |
Number of Contigs: 155
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,222,692 (bp) |
| GC Percentage |
39.89
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/599/935/GCA_003599935.1_ASM359993v1
|
| CDS |
2159
|
| Genes |
2277
|
| mRNA |
2277
|
| misc RNA |
67
|
| rRNA |
4
|
| tRNA |
46
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.85 %
|
| CheckM Completeness |
95.88 %
|
| CheckM Contamination |
2.41 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM359993v1
|
| GenBank Assembly Accession |
GCA_003599935.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003599935.1
[NCBI]
|
| BioSample |
SAMN08564445
[NCBI]
|
| BioProject |
PRJNA434586
[NCBI]
|
| Submitter |
ITQB NOVA
|
| Submission Date |
2018-02-19T13:01:03.753
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
PTTK01
|
| NCBI TaxID |
257758
|
| Isolation Source |
|
| Geo Location |
Spain
|
