Genome Meta Information: Veillonella atypica KHUD_V1 (GCA_003605975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003605975.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica KHUD_V1 | ||
| Strain or Isolate | KHUD_V1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 1082.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,189,293 (bp) | ||
| GC Percentage | 39.01 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/605/975/GCA_003605975.1_ASM360597v1 | ||
| CDS | 1991 | ||
| Genes | 2058 | ||
| mRNA | 2058 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.84 % | ||
| CheckM Completeness | 98.31 % | ||
| CheckM Contamination | 4.83 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM360597v1 |
| GenBank Assembly Accession | GCA_003605975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003605975.1 [NCBI] |
| BioSample | SAMN09946802 [NCBI] |
| BioProject | PRJNA488979 [NCBI] |
| Submitter | Kyung Hee University |
| Submission Date | 2018-09-03T03:37:05.956 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QXZZ01 |
| NCBI TaxID | 39777 |
| Isolation Source | |
| Geo Location | South Korea: Seoul |
