Genome Meta Information: Streptococcus ilei JS71 (GCA_003627135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003627135.1 | ||
| HOMD Taxon-ID | HMT-0456 | ||
| Species Name (in use by HOMD) | Streptococcus ilei | ||
| Organism Name (as deposited) | HMT-456 Streptococcus koreensis JS71 | ||
| Strain or Isolate | JS71 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus ilei |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 1260 | ||
| Contigs |
|
||
| Total Sequence Length | 2,009,598 (bp) | ||
| GC Percentage | 42.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/627/135/GCA_003627135.1_ASM362713v1 | ||
| CDS | 1866 | ||
| Genes | 1973 | ||
| mRNA | 0 | ||
| misc RNA | 33 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0.19 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM362713v1 |
| GenBank Assembly Accession | GCA_003627135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003627135.1 [NCBI] |
| BioSample | SAMN10135881 [NCBI] |
| BioProject | PRJNA493533 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-09-27T03:29:24.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2382163 |
| Isolation Source | subgingival plaque |
| Geo Location | Korea: Gwangju |
