Genome Meta Information: Campylobacter rectus OH2158 (GCA_003859865.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003859865.1 | ||
| HOMD Taxon-ID | HMT-0748 | ||
| Species Name (in use by HOMD) | Campylobacter rectus | ||
| Organism Name (as deposited) | HMT-748 Campylobacter rectus OH2158 | ||
| Strain or Isolate | OH2158 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A rectus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 16 | ||
| Contigs |
|
||
| Total Sequence Length | 2,491,340 (bp) | ||
| GC Percentage | 44.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/859/865/GCA_003859865.1_ASM385986v1 | ||
| CDS | 2229 | ||
| Genes | 2280 | ||
| mRNA | 2280 | ||
| misc RNA | 5 | ||
| rRNA | 2 | ||
| tRNA | 43 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.94 % | ||
| CheckM Completeness | 98.19 % | ||
| CheckM Contamination | 0.42 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM385986v1 |
| GenBank Assembly Accession | GCA_003859865.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003859865.1 [NCBI] |
| BioSample | SAMN10478675 [NCBI] |
| BioProject | PRJNA506243 [NCBI] |
| Submitter | UC Davis |
| Submission Date | 2018-11-26T15:20:04.620 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RQYP01 |
| NCBI TaxID | 203 |
| Isolation Source | dog mouth |
| Geo Location | United Kingdom: Leicestershire |
