Genome Meta Information: Lachnoanaerobaculum gingivalis KCOM 2030 (GCA_003862475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003862475.1 | ||
| HOMD Taxon-ID | HMT-0460 | ||
| Species Name (in use by HOMD) | Lachnoanaerobaculum gingivalis | ||
| Organism Name (as deposited) | HMT-460 Lachnoanaerobaculum gingivalis KCOM 2030 | ||
| Strain or Isolate | KCOM 2030 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum; s__Lachnoanaerobaculum gingivalis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1251.6 | ||
| Contigs |
|
||
| Total Sequence Length | 3,097,953 (bp) | ||
| GC Percentage | 35.87 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/475/GCA_003862475.1_ASM386247v1 | ||
| CDS | 2824 | ||
| Genes | 2907 | ||
| mRNA | 0 | ||
| misc RNA | 22 | ||
| rRNA | 10 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.38 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM386247v1 |
| GenBank Assembly Accession | GCA_003862475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003862475.1 [NCBI] |
| BioSample | SAMN10461966 [NCBI] |
| BioProject | PRJNA506507 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-11-22T02:16:13.933 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RRCO01 |
| NCBI TaxID | 2490855 |
| Isolation Source | Subgingival dental plaque |
| Geo Location | South Korea: Gwangju |
