Genome Meta Information: Lachnoanaerobaculum orale DSM 24553 (GCA_003862485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003862485.1 | ||
| HOMD Taxon-ID | HMT-0082 | ||
| Species Name (in use by HOMD) | Lachnoanaerobaculum orale | ||
| Organism Name (as deposited) | HMT-082 Lachnoanaerobaculum orale DSM 24553 | ||
| Strain or Isolate | DSM 24553 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoanaerobaculum; s__Lachnoanaerobaculum orale |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 1310.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,800,999 (bp) | ||
| GC Percentage | 37.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/485/GCA_003862485.1_ASM386248v1 | ||
| CDS | 2563 | ||
| Genes | 2640 | ||
| mRNA | 2640 | ||
| misc RNA | 17 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.75 % | ||
| CheckM Contamination | 0.31 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM386248v1 |
| GenBank Assembly Accession | GCA_003862485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003862485.1 [NCBI] |
| BioSample | SAMN10465328 [NCBI] |
| BioProject | PRJNA506617 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-11-23T01:13:14.983 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | RRCM01 |
| NCBI TaxID | 979627 |
| Isolation Source | saliva |
| Geo Location | Sweden: Stockholm |
