Genome Meta Information: Corynebacterium bovis 4828 (GCA_003932475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003932475.1 | ||
| HOMD Taxon-ID | HMT-0208 | ||
| Species Name (in use by HOMD) | Corynebacterium bovis | ||
| Organism Name (as deposited) | HMT-208 Corynebacterium bovis 4828 | ||
| Strain or Isolate | 4828 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium bovis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 64.5 | ||
| Contigs |
|
||
| Total Sequence Length | 2,633,176 (bp) | ||
| GC Percentage | 72.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/475/GCA_003932475.1_ASM393247v1 | ||
| CDS | 2083 | ||
| Genes | 2156 | ||
| mRNA | 2156 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 59 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 99.79 % | ||
| CheckM Completeness | 98.03 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM393247v1 |
| GenBank Assembly Accession | GCA_003932475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003932475.1 [NCBI] |
| BioSample | SAMN08139026 [NCBI] |
| BioProject | PRJNA421327 [NCBI] |
| Submitter | Bacterial Special Pathogens Branch (CDC) |
| Submission Date | 2017-12-06T13:28:05.547 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PQNW01 |
| NCBI TaxID | 36808 |
| Isolation Source | mastitis |
| Geo Location | USA: Hawaii |
