Taxon Table | Genome Table
Genome Meta Information:
Fusobacterium
polymorphum
OH5060 (GCA_003932835.1)
| HOMD Genome-ID |
GCA_003932835.1
|
| HOMD Taxon-ID |
HMT-0202
|
| Species Name (in use by HOMD) |
Fusobacterium polymorphum
|
| Organism Name (as deposited) |
HMT-202 Fusobacterium polymorphum OH5060
|
| Strain or Isolate |
OH5060
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;
s__Fusobacterium polymorphum |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
85
|
| Contigs |
Number of Contigs: 192
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,492,174 (bp) |
| GC Percentage |
26.96
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/932/835/GCA_003932835.1_ASM393283v1
|
| CDS |
2321
|
| Genes |
2398
|
| mRNA |
2398
|
| misc RNA |
24
|
| rRNA |
6
|
| tRNA |
46
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
92.31 %
|
| CheckM Completeness |
97.44 %
|
| CheckM Contamination |
1.82 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM393283v1
|
| GenBank Assembly Accession |
GCA_003932835.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003932835.1
[NCBI]
|
| BioSample |
SAMN10478687
[NCBI]
|
| BioProject |
PRJNA506243
[NCBI]
|
| Submitter |
UC Davis
|
| Submission Date |
2018-11-26T15:20:04.823
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
RQZD01
|
| NCBI TaxID |
851
|
| Isolation Source |
dog mouth
|
| Geo Location |
United Kingdom: Leicestershire
|
