Genome Meta Information: Streptococcus parasanguinis A1 (GCA_003942525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003942525.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis A1 | ||
| Strain or Isolate | A1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus parasanguinis_F |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 124 | ||
| Contigs |
|
||
| Total Sequence Length | 2,061,849 (bp) | ||
| GC Percentage | 41.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/525/GCA_003942525.1_ASM394252v1 | ||
| CDS | 1947 | ||
| Genes | 2048 | ||
| mRNA | 2048 | ||
| misc RNA | 37 | ||
| rRNA | 5 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.12 % | ||
| CheckM Completeness | 96.88 % | ||
| CheckM Contamination | 2.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM394252v1 |
| GenBank Assembly Accession | GCA_003942525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003942525.1 [NCBI] |
| BioSample | SAMN09631758 [NCBI] |
| BioProject | PRJNA480251 [NCBI] |
| Submitter | Clemson University |
| Submission Date | 2018-07-09T11:29:05.693 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RJNG01 |
| NCBI TaxID | 1318 |
| Isolation Source | dental plaque |
| Geo Location | USA: Florida |
