Genome Meta Information: Streptococcus oralis BCC52 (GCA_003942875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003942875.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis BCC52 | ||
| Strain or Isolate | BCC52 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus oralis_BX |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 73 | ||
| Contigs |
|
||
| Total Sequence Length | 2,089,314 (bp) | ||
| GC Percentage | 40.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/942/875/GCA_003942875.1_ASM394287v1 | ||
| CDS | 1942 | ||
| Genes | 2040 | ||
| mRNA | 2040 | ||
| misc RNA | 43 | ||
| rRNA | 7 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.91 % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 1.04 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM394287v1 |
| GenBank Assembly Accession | GCA_003942875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003942875.1 [NCBI] |
| BioSample | SAMN09631736 [NCBI] |
| BioProject | PRJNA480251 [NCBI] |
| Submitter | Clemson University |
| Submission Date | 2018-07-09T11:29:05.350 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RMVK01 |
| NCBI TaxID | 1303 |
| Isolation Source | dental plaque |
| Geo Location | USA: Florida |
