Genome Meta Information: Streptococcus intermedius BCC01 (GCA_003943155.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003943155.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius BCC01 | ||
| Strain or Isolate | BCC01 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 56 | ||
| Contigs |
|
||
| Total Sequence Length | 1,993,716 (bp) | ||
| GC Percentage | 37.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/943/155/GCA_003943155.1_ASM394315v1 | ||
| CDS | 1925 | ||
| Genes | 2017 | ||
| mRNA | 2017 | ||
| misc RNA | 33 | ||
| rRNA | 4 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.4 % | ||
| CheckM Completeness | 93.52 % | ||
| CheckM Contamination | 1.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM394315v1 |
| GenBank Assembly Accession | GCA_003943155.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003943155.1 [NCBI] |
| BioSample | SAMN09631716 [NCBI] |
| BioProject | PRJNA480251 [NCBI] |
| Submitter | Clemson University |
| Submission Date | 2018-07-09T11:29:04.943 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RJOR01 |
| NCBI TaxID | 1338 |
| Isolation Source | dental plaque |
| Geo Location | USA: Florida |
