Genome Meta Information: Streptococcus intermedius BCC34 (GCA_003944025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003944025.1 | ||
| HOMD Taxon-ID | HMT-0644 | ||
| Species Name (in use by HOMD) | Streptococcus intermedius | ||
| Organism Name (as deposited) | HMT-644 Streptococcus intermedius BCC34 | ||
| Strain or Isolate | BCC34 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus intermedius |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 64 | ||
| Contigs |
|
||
| Total Sequence Length | 1,953,433 (bp) | ||
| GC Percentage | 37.43 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/944/025/GCA_003944025.1_ASM394402v1 | ||
| CDS | 1856 | ||
| Genes | 1947 | ||
| mRNA | 1947 | ||
| misc RNA | 34 | ||
| rRNA | 5 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.36 % | ||
| CheckM Completeness | 94.76 % | ||
| CheckM Contamination | 3.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM394402v1 |
| GenBank Assembly Accession | GCA_003944025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003944025.1 [NCBI] |
| BioSample | SAMN09631717 [NCBI] |
| BioProject | PRJNA480251 [NCBI] |
| Submitter | Clemson University |
| Submission Date | 2018-07-09T11:29:04.960 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RJOQ01 |
| NCBI TaxID | 1338 |
| Isolation Source | dental plaque |
| Geo Location | USA: Florida |
