Genome Meta Information: Ureaplasma parvum OMC-P162 (GCA_003953005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003953005.1 | ||
| HOMD Taxon-ID | HMT-0799 | ||
| Species Name (in use by HOMD) | Ureaplasma parvum | ||
| Organism Name (as deposited) | HMT-799 Ureaplasma parvum OMC-P162 | ||
| Strain or Isolate | OMC-P162 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma; s__Ureaplasma parvum |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 996 | ||
| Contigs |
|
||
| Total Sequence Length | 732,031 (bp) | ||
| GC Percentage | 25.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/953/005/GCA_003953005.1_ASM395300v1 | ||
| CDS | 1219 | ||
| Genes | 1261 | ||
| mRNA | 1261 | ||
| misc RNA | 5 | ||
| rRNA | 6 | ||
| tRNA | 30 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.44 % | ||
| CheckM Completeness | 97.68 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM395300v1 |
| GenBank Assembly Accession | GCA_003953005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003953005.1 [NCBI] |
| BioSample | SAMD00111973 [NCBI] |
| BioProject | PRJDB6718 [NCBI] |
| Submitter | Department of Developmental Medicine, Research Institute, Osaka Women’s and Children’s Hospital |
| Submission Date | 2018-10-17T16:05:58.963 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 38504 |
| Isolation Source | |
| Geo Location | Japan |
