Genome Meta Information: Streptococcus pneumoniae HU-OH (GCA_003966505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003966505.1 | ||
| HOMD Taxon-ID | HMT-0734 | ||
| Species Name (in use by HOMD) | Streptococcus pneumoniae | ||
| Organism Name (as deposited) | HMT-734 Streptococcus pneumoniae HU-OH | ||
| Strain or Isolate | HU-OH | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pneumoniae |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina Miseq | ||
| Genome Coverage | 573 | ||
| Contigs |
|
||
| Total Sequence Length | 2,058,492 (bp) | ||
| GC Percentage | 39.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/966/505/GCA_003966505.1_ASM396650v1 | ||
| CDS | 2025 | ||
| Genes | 2169 | ||
| mRNA | 2169 | ||
| misc RNA | 73 | ||
| rRNA | 12 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.77 % | ||
| CheckM Completeness | 99.1 % | ||
| CheckM Contamination | 0.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM396650v1 |
| GenBank Assembly Accession | GCA_003966505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003966505.1 [NCBI] |
| BioSample | SAMD00137664 [NCBI] |
| BioProject | PRJDB7410 [NCBI] |
| Submitter | Department of Infectious diseases, Faculty of Medicine, University of Miyazaki |
| Submission Date | 2018-10-11T01:00:31.860 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1313 |
| Isolation Source | |
| Geo Location | Japan:Hokkaido |
