Taxon Table | Genome Table
Genome Meta Information:
Corynebacterium
propinquum
HSID18036 (GCA_003989165.1)
| HOMD Genome-ID |
GCA_003989165.1
|
| HOMD Taxon-ID |
HMT-0059
|
| Species Name (in use by HOMD) |
Corynebacterium propinquum
|
| Organism Name (as deposited) |
HMT-059 Corynebacterium propinquum HSID18036
|
| Strain or Isolate |
HSID18036
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium;
s__Corynebacterium propinquum |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
529.94
|
| Contigs |
Number of Contigs: 245
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,702,312 (bp) |
| GC Percentage |
56.73
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/165/GCA_003989165.1_ASM398916v1
|
| CDS |
2493
|
| Genes |
2558
|
| mRNA |
2558
|
| misc RNA |
8
|
| rRNA |
7
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.42 %
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM398916v1
|
| GenBank Assembly Accession |
GCA_003989165.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003989165.1
[NCBI]
|
| BioSample |
SAMN10118515
[NCBI]
|
| BioProject |
PRJNA492917
[NCBI]
|
| Submitter |
University of Wisconsin-Madison
|
| Submission Date |
2018-09-24T17:25:03.867
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
RBME01
|
| NCBI TaxID |
43769
|
| Isolation Source |
nasal lavage
|
| Geo Location |
USA:Wisconsin
|
