Genome Meta Information: Corynebacterium propinquum HSID18035 (GCA_003989475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003989475.1 | ||
| HOMD Taxon-ID | HMT-0059 | ||
| Species Name (in use by HOMD) | Corynebacterium propinquum | ||
| Organism Name (as deposited) | HMT-059 Corynebacterium propinquum HSID18035 | ||
| Strain or Isolate | HSID18035 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium propinquum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 592.66 | ||
| Contigs |
|
||
| Total Sequence Length | 2,548,974 (bp) | ||
| GC Percentage | 56.48 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/475/GCA_003989475.1_ASM398947v1 | ||
| CDS | 2308 | ||
| Genes | 2368 | ||
| mRNA | 2368 | ||
| misc RNA | 7 | ||
| rRNA | 5 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.42 % | ||
| CheckM Completeness | 98.6 % | ||
| CheckM Contamination | 0.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM398947v1 |
| GenBank Assembly Accession | GCA_003989475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003989475.1 [NCBI] |
| BioSample | SAMN10118514 [NCBI] |
| BioProject | PRJNA492917 [NCBI] |
| Submitter | University of Wisconsin-Madison |
| Submission Date | 2018-09-24T17:25:03.853 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RBMD01 |
| NCBI TaxID | 43769 |
| Isolation Source | nasal lavage |
| Geo Location | USA:Wisconsin |
