Genome Meta Information: Corynebacterium afermentans HSID17239 (GCA_003989555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003989555.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans HSID17239 | ||
| Strain or Isolate | HSID17239 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 758.52 | ||
| Contigs |
|
||
| Total Sequence Length | 2,317,331 (bp) | ||
| GC Percentage | 64.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/989/555/GCA_003989555.1_ASM398955v1 | ||
| CDS | 2138 | ||
| Genes | 2209 | ||
| mRNA | 2209 | ||
| misc RNA | 8 | ||
| rRNA | 5 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 83.38 % | ||
| CheckM Completeness | 97.43 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM398955v1 |
| GenBank Assembly Accession | GCA_003989555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003989555.1 [NCBI] |
| BioSample | SAMN10118501 [NCBI] |
| BioProject | PRJNA492917 [NCBI] |
| Submitter | University of Wisconsin-Madison |
| Submission Date | 2018-09-24T17:25:03.647 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RBLQ01 |
| NCBI TaxID | 38288 |
| Isolation Source | nasal lavage |
| Geo Location | USA:Wisconsin |
