Genome Meta Information: Eikenella corrodens KCOM 3110 (GCA_003990355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003990355.1 | ||
| HOMD Taxon-ID | HMT-0577 | ||
| Species Name (in use by HOMD) | Eikenella corrodens | ||
| Organism Name (as deposited) | HMT-577 Eikenella corrodens KCOM 3110 | ||
| Strain or Isolate | KCOM 3110 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Eikenella; s__Eikenella corrodens_B |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 803 | ||
| Contigs |
|
||
| Total Sequence Length | 2,458,478 (bp) | ||
| GC Percentage | 56.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/990/355/GCA_003990355.1_ASM399035v1 | ||
| CDS | 2329 | ||
| Genes | 2411 | ||
| mRNA | 2411 | ||
| misc RNA | 16 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.41 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM399035v1 |
| GenBank Assembly Accession | GCA_003990355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003990355.1 [NCBI] |
| BioSample | SAMN10622481 [NCBI] |
| BioProject | PRJNA511136 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-12-20T21:42:04.900 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 3682651 |
| Isolation Source | subgingival plaque |
| Geo Location | South Korea: Gwangju |
