Genome Meta Information: Fusobacterium necrophorum ATCC 25286 (GCA_004006635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004006635.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum ATCC 25286 | ||
| Strain or Isolate | ATCC 25286 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Oxford Nanopore MiniION; Illumina MiSeq | ||
| Genome Coverage | 60 | ||
| Contigs |
|
||
| Total Sequence Length | 2,678,415 (bp) | ||
| GC Percentage | 34.03 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/006/635/GCA_004006635.1_ASM400663v1 | ||
| CDS | 2342 | ||
| Genes | 2427 | ||
| mRNA | 2427 | ||
| misc RNA | 15 | ||
| rRNA | 18 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 97.05 % | ||
| CheckM Contamination | 7.43 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM400663v1 |
| GenBank Assembly Accession | GCA_004006635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004006635.1 [NCBI] |
| BioSample | SAMN10697414 [NCBI] |
| BioProject | PRJNA513186 [NCBI] |
| Submitter | Virginia Tech |
| Submission Date | 2019-01-06T10:58:03.070 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 143388 |
| Isolation Source | NA |
| Geo Location | NA |
