Genome Meta Information: Akkermansia muciniphila EB-AMDK-11 (GCA_004015025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004015025.1 | ||
| HOMD Taxon-ID | HMT-963 | ||
| Species Name (in use by HOMD) | Akkermansia muciniphila | ||
| Organism Name (as deposited) | HMT-963 Akkermansia muciniphila EB-AMDK-11 | ||
| Strain or Isolate | EB-AMDK-11 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia; s__Akkermansia muciniphila |
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| Sequencing Technology | PacBio | ||
| Genome Coverage | 124.0x | ||
| Contigs |
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| Total Sequence Length | 2,764,311 (bp) | ||
| GC Percentage | 55.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/015/025/GCA_004015025.1_ASM401502v1 | ||
| CDS | 2289 | ||
| Genes | 2358 | ||
| mRNA | 2358 | ||
| misc RNA | 5 | ||
| rRNA | 9 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.61 % | ||
| CheckM Completeness | 97.96 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.21 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM401502v1 |
| GenBank Assembly Accession | GCA_004015025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004015025.1 [NCBI] |
| BioSample | SAMN08329199 [NCBI] |
| BioProject | PRJNA429088 [NCBI] |
| Submitter | Korea Food Research Institute |
| Submission Date | 2018-01-09T03:56:03.640 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 239935 |
| Isolation Source | Korean adult feces |
| Geo Location | South Korea: Seoul |
