Genome Meta Information: Streptococcus pyogenes CCUG 4207 (GCA_004028355.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004028355.1 | ||
| HOMD Taxon-ID | HMT-0745 | ||
| Species Name (in use by HOMD) | Streptococcus pyogenes | ||
| Organism Name (as deposited) | HMT-745 Streptococcus pyogenes CCUG 4207 | ||
| Strain or Isolate | CCUG 4207 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pyogenes |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | |||
| Contigs |
|
||
| Total Sequence Length | 1,914,862 (bp) | ||
| GC Percentage | 38.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/028/355/GCA_004028355.1_ASM402835v1 | ||
| CDS | 1891 | ||
| Genes | 2027 | ||
| mRNA | 2027 | ||
| misc RNA | 50 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 100 % | ||
| CheckM Completeness | 99.57 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM402835v1 |
| GenBank Assembly Accession | GCA_004028355.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004028355.1 [NCBI] |
| BioSample | SAMN08915690 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2018-04-11T11:00:07.370 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1314 |
| Isolation Source | throat swab |
| Geo Location | United Kingdom:Manchester |
