Genome Meta Information: Actinomyces oricola R5292 (GCA_004104015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004104015.1 | ||
| HOMD Taxon-ID | HMT-708 | ||
| Species Name (in use by HOMD) | Actinomyces oricola | ||
| Organism Name (as deposited) | HMT-708 Actinomyces oricola R5292 | ||
| Strain or Isolate | R5292 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oricola |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 60.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,930,686 (bp) | ||
| GC Percentage | 68.69 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/104/015/GCA_004104015.1_ASM410401v1 | ||
| CDS | 2433 | ||
| Genes | 2507 | ||
| mRNA | 2507 | ||
| misc RNA | 15 | ||
| rRNA | 4 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.76 % | ||
| CheckM Contamination | 1.42 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.43 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM410401v1 |
| GenBank Assembly Accession | GCA_004104015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004104015.1 [NCBI] |
| BioSample | SAMN10601821 [NCBI] |
| BioProject | PRJNA510320 [NCBI] |
| Submitter | Chinese Center for Disease Control and Prevention |
| Submission Date | 2018-12-17T09:28:02.963 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RYFV01 |
| NCBI TaxID | 206043 |
| Isolation Source | dental abscess |
| Geo Location | United Kingdom: Bury |
