Genome Meta Information: Cellulosimicrobium funkei JCM 15619 (GCA_004114655.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004114655.2 | ||
| HOMD Taxon-ID | HMT-0374 | ||
| Species Name (in use by HOMD) | Cellulosimicrobium funkei | ||
| Organism Name (as deposited) | HMT-374 Cellulosimicrobium funkei JCM 15619 | ||
| Strain or Isolate | JCM 15619 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium; s__Cellulosimicrobium funkei |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 564 | ||
| Contigs |
|
||
| Total Sequence Length | 4,379,053 (bp) | ||
| GC Percentage | 74.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/114/655/GCA_004114655.2_ASM411465v2 | ||
| CDS | 3903 | ||
| Genes | 3995 | ||
| mRNA | 3995 | ||
| misc RNA | 26 | ||
| rRNA | 3 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.39 % | ||
| CheckM Contamination | 1.91 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM411465v2 |
| GenBank Assembly Accession | GCA_004114655.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004114655.2 [NCBI] |
| BioSample | SAMN10754122 [NCBI] |
| BioProject | PRJNA515345 [NCBI] |
| Submitter | Dalian University of Technology |
| Submission Date | 2019-01-15T21:49:05.553 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SDBQ02 |
| NCBI TaxID | 412439 |
| Isolation Source | soil |
| Geo Location | China: Panjin |
