Genome Meta Information: Staphylococcus warneri TRPF4 (GCA_004125365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004125365.1 | ||
| HOMD Taxon-ID | HMT-0076 | ||
| Species Name (in use by HOMD) | Staphylococcus warneri | ||
| Organism Name (as deposited) | HMT-076 Staphylococcus warneri TRPF4 | ||
| Strain or Isolate | TRPF4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus warneri |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 350 | ||
| Contigs |
|
||
| Total Sequence Length | 2,634,550 (bp) | ||
| GC Percentage | 32.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/125/365/GCA_004125365.1_ASM412536v1 | ||
| CDS | 2537 | ||
| Genes | 2663 | ||
| mRNA | 2663 | ||
| misc RNA | 49 | ||
| rRNA | 15 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.63 % | ||
| CheckM Completeness | 99.55 % | ||
| CheckM Contamination | 0.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM412536v1 |
| GenBank Assembly Accession | GCA_004125365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004125365.1 [NCBI] |
| BioSample | SAMN08103245 [NCBI] |
| BioProject | PRJNA420010 [NCBI] |
| Submitter | Universidade Federal de Vicosa |
| Submission Date | 2017-11-28T05:34:04.033 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PJLY01 |
| NCBI TaxID | 1292 |
| Isolation Source | Marine water sample collected about 100 m from Turtle Beach |
| Geo Location | Brazil: Trindade Island |
