Genome Meta Information: Streptococcus australis NU89 (GCA_004125815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004125815.1 | ||
| HOMD Taxon-ID | HMT-0073 | ||
| Species Name (in use by HOMD) | Streptococcus australis | ||
| Organism Name (as deposited) | HMT-073 Streptococcus australis NU89 | ||
| Strain or Isolate | NU89 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp001072385 |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 1,962,410 (bp) | ||
| GC Percentage | 42.51 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/125/815/GCA_004125815.1_ASM412581v1 | ||
| CDS | 1817 | ||
| Genes | 1908 | ||
| mRNA | 1908 | ||
| misc RNA | 37 | ||
| rRNA | 5 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.08 % | ||
| CheckM Completeness | 87.1 % | ||
| CheckM Contamination | 2.59 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM412581v1 |
| GenBank Assembly Accession | GCA_004125815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004125815.1 [NCBI] |
| BioSample | SAMN09060970 [NCBI] |
| BioProject | PRJNA454893 [NCBI] |
| Submitter | Newcastle University |
| Submission Date | 2018-05-03T16:22:03.393 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QFBE01 |
| NCBI TaxID | 113107 |
| Isolation Source | Middle ear effusion fluid |
| Geo Location | United Kingdom |
