Genome Meta Information: Streptococcus parasanguinis NU87 (GCA_004127205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004127205.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis NU87 | ||
| Strain or Isolate | NU87 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus parasanguinis_Z |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 30 | ||
| Contigs |
|
||
| Total Sequence Length | 2,081,775 (bp) | ||
| GC Percentage | 41.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/127/205/GCA_004127205.1_ASM412720v1 | ||
| CDS | 1999 | ||
| Genes | 2093 | ||
| mRNA | 2093 | ||
| misc RNA | 37 | ||
| rRNA | 6 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.18 % | ||
| CheckM Completeness | 96.76 % | ||
| CheckM Contamination | 2.43 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM412720v1 |
| GenBank Assembly Accession | GCA_004127205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004127205.1 [NCBI] |
| BioSample | SAMN09060971 [NCBI] |
| BioProject | PRJNA454893 [NCBI] |
| Submitter | Newcastle University |
| Submission Date | 2018-05-03T16:22:03.410 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEWI01 |
| NCBI TaxID | 1318 |
| Isolation Source | Adenoid |
| Geo Location | United Kingdom |
