Genome Meta Information: Nanogingivalis gingivitcus TM7_CMJM_G6_1_HOT_870 (GCA_004151455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004151455.1 | ||
| HOMD Taxon-ID | HMT-0870 | ||
| Species Name (in use by HOMD) | Nanogingivalis gingivitcus | ||
| Organism Name (as deposited) | HMT-870 Nanogingivalis gingivitcus TM7_CMJM_G6_1_HOT_870 | ||
| Strain or Isolate | TM7_CMJM_G6_1_HOT_870 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__Saccharimonadia;o__Saccharimonadales;f__Nanogingivalaceae;g__Nanogingivalis; s__Nanogingivalis gingivitcus |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 625,762 (bp) | ||
| GC Percentage | 32.34 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/151/455/GCA_004151455.1_ASM415145v1 | ||
| CDS | 596 | ||
| Genes | 640 | ||
| mRNA | 640 | ||
| misc RNA | 3 | ||
| rRNA | 3 | ||
| tRNA | 38 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 84.33 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM415145v1 |
| GenBank Assembly Accession | GCA_004151455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004151455.1 [NCBI] |
| BioSample | SAMN08449953 [NCBI] |
| BioProject | PRJNA384792 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2018-02-01T03:29:03.370 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PRLK01 |
| NCBI TaxID | 2171992 |
| Isolation Source | Oral cavity |
| Geo Location | not applicable |
