Genome Meta Information: Staphylococcus saccharolyticus DVP5-16-4677 (GCA_004291175.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004291175.2 | ||
| HOMD Taxon-ID | HMT-0789 | ||
| Species Name (in use by HOMD) | Staphylococcus saccharolyticus | ||
| Organism Name (as deposited) | HMT-789 Staphylococcus saccharolyticus DVP5-16-4677 | ||
| Strain or Isolate | DVP5-16-4677 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus saccharolyticus |
||
| Sequencing Technology | Oxford Nanopore MinION; Illumina MiSeq | ||
| Genome Coverage | 188 | ||
| Contigs |
|
||
| Total Sequence Length | 2,396,786 (bp) | ||
| GC Percentage | 32.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/291/175/GCA_004291175.2_ASM429117v2 | ||
| CDS | 2621 | ||
| Genes | 2748 | ||
| mRNA | 2748 | ||
| misc RNA | 51 | ||
| rRNA | 16 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.93 % | ||
| CheckM Completeness | 85.42 % | ||
| CheckM Contamination | 1.8 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM429117v2 |
| GenBank Assembly Accession | GCA_004291175.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004291175.2 [NCBI] |
| BioSample | SAMN09259159 [NCBI] |
| BioProject | PRJNA473062 [NCBI] |
| Submitter | Aarhus University |
| Submission Date | 2018-05-25T05:55:03.943 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33028 |
| Isolation Source | implant-asscoiated infection |
| Geo Location | Sweden: Oerebro |
