Genome Meta Information: Dietzia cinnamea 55 (GCA_004346635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004346635.1 | ||
| HOMD Taxon-ID | HMT-0368 | ||
| Species Name (in use by HOMD) | Dietzia cinnamea | ||
| Organism Name (as deposited) | HMT-368 Dietzia cinnamea 55 | ||
| Strain or Isolate | 55 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Dietzia; s__Dietzia cinnamea |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 422 | ||
| Contigs |
|
||
| Total Sequence Length | 3,549,427 (bp) | ||
| GC Percentage | 71.01 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/346/635/GCA_004346635.1_ASM434663v1 | ||
| CDS | 3243 | ||
| Genes | 3332 | ||
| mRNA | 3332 | ||
| misc RNA | 21 | ||
| rRNA | 5 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.49 % | ||
| CheckM Completeness | 99.16 % | ||
| CheckM Contamination | 0.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM434663v1 |
| GenBank Assembly Accession | GCA_004346635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004346635.1 [NCBI] |
| BioSample | SAMN10363100 [NCBI] |
| BioProject | PRJNA500537 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2018-11-01T21:28:07.257 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | SMCX01 |
| NCBI TaxID | 321318 |
| Isolation Source | missing |
| Geo Location | missing |
