Genome Meta Information: Campylobacter showae ATCC 51146 (GCA_004803815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_004803815.1 | ||
| HOMD Taxon-ID | HMT-0763 | ||
| Species Name (in use by HOMD) | Campylobacter showae | ||
| Organism Name (as deposited) | HMT-763 Campylobacter showae ATCC 51146 | ||
| Strain or Isolate | ATCC 51146 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A showae |
||
| Sequencing Technology | Sanger dideoxy sequencing; 454; Illumina | ||
| Genome Coverage | 809 | ||
| Contigs |
|
||
| Total Sequence Length | 2,097,887 (bp) | ||
| GC Percentage | 45.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/803/815/GCA_004803815.1_ASM480381v1 | ||
| CDS | 2005 | ||
| Genes | 2065 | ||
| mRNA | 2065 | ||
| misc RNA | 5 | ||
| rRNA | 6 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.74 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM480381v1 |
| GenBank Assembly Accession | GCA_004803815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_004803815.1 [NCBI] |
| BioSample | SAMN03737988 [NCBI] |
| BioProject | PRJNA284988 [NCBI] |
| Submitter | USDA, ARS, WRRC |
| Submission Date | 2015-05-27T17:03:40.000 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 204 |
| Isolation Source | oral |
| Geo Location | Japan: Showa |
