Genome Meta Information: Agrobacterium tumefaciens CFBP5877 (GCA_005221345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005221345.1 | ||
| HOMD Taxon-ID | HMT-485 | ||
| Species Name (in use by HOMD) | Agrobacterium tumefaciens | ||
| Organism Name (as deposited) | HMT-485 Agrobacterium tumefaciens CFBP5877 | ||
| Strain or Isolate | CFBP5877 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium; s__Agrobacterium sp900012625 |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 291.0x | ||
| Contigs |
|
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| Total Sequence Length | 5,996,243 (bp) | ||
| GC Percentage | 59.06 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/221/345/GCA_005221345.1_ASM522134v1 | ||
| CDS | 5555 | ||
| Genes | 5685 | ||
| mRNA | 5685 | ||
| misc RNA | 61 | ||
| rRNA | 12 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.26 % | ||
| CheckM Completeness | 99.98 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 4.36 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM522134v1 |
| GenBank Assembly Accession | GCA_005221345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005221345.1 [NCBI] |
| BioSample | SAMN11489453 [NCBI] |
| BioProject | PRJNA534393 [NCBI] |
| Submitter | Academia Sinica |
| Submission Date | 2019-04-24T03:37:12.044 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 358 |
| Isolation Source | |
| Geo Location | NA |
