Taxon Table | Genome Table
Genome Meta Information:
Veillonella
tobetsuensis
PAGU 1578 (GCA_005403165.1)
| HOMD Genome-ID |
GCA_005403165.1
|
| HOMD Taxon-ID |
HMT-0421
|
| Species Name (in use by HOMD) |
Veillonella tobetsuensis
|
| Organism Name (as deposited) |
HMT-421 Veillonella tobetsuensis PAGU 1578
|
| Strain or Isolate |
PAGU 1578
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;
s__Veillonella tobetsuensis |
| Sequencing Technology |
Illumina
|
| Genome Coverage |
222
|
| Contigs |
Number of Contigs: 133
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,098,634 (bp) |
| GC Percentage |
38.99
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/403/165/GCA_005403165.1_ASM540316v1
|
| CDS |
1883
|
| Genes |
1956
|
| mRNA |
1956
|
| misc RNA |
19
|
| rRNA |
4
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
97.4 %
|
| CheckM Completeness |
100 %
|
| CheckM Contamination |
1.06 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM540316v1
|
| GenBank Assembly Accession |
GCA_005403165.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_005403165.1
[NCBI]
|
| BioSample |
SAMD00163388
[NCBI]
|
| BioProject |
PRJDB8051
[NCBI]
|
| Submitter |
Department of Infectious Diseases, National Center for Global Health and Medicine
|
| Submission Date |
2019-03-25T15:05:38.577
|
| Assembly Method |
|
| Assembly Level |
Scaffold
|
| Sequencing Status |
|
| WGS
Project |
BJCQ01
|
| NCBI TaxID |
1110546
|
| Isolation Source |
|
| Geo Location |
Japan
|
