Genome Meta Information: Veillonella tobetsuensis PAGU 1579 (GCA_005403265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005403265.1 | ||
| HOMD Taxon-ID | HMT-0421 | ||
| Species Name (in use by HOMD) | Veillonella tobetsuensis | ||
| Organism Name (as deposited) | HMT-421 Veillonella tobetsuensis PAGU 1579 | ||
| Strain or Isolate | PAGU 1579 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella tobetsuensis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 171 | ||
| Contigs |
|
||
| Total Sequence Length | 2,151,918 (bp) | ||
| GC Percentage | 38.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/403/265/GCA_005403265.1_ASM540326v1 | ||
| CDS | 1900 | ||
| Genes | 1959 | ||
| mRNA | 1959 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.52 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM540326v1 |
| GenBank Assembly Accession | GCA_005403265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005403265.1 [NCBI] |
| BioSample | SAMD00163389 [NCBI] |
| BioProject | PRJDB8051 [NCBI] |
| Submitter | Department of Infectious Diseases, National Center for Global Health and Medicine |
| Submission Date | 2019-03-25T15:05:38.593 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | BJCR01 |
| NCBI TaxID | 1110546 |
| Isolation Source | |
| Geo Location | Japan |
