Genome Meta Information: Cutibacterium avidum P313 (GCA_005796055.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005796055.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum P313 | ||
| Strain or Isolate | P313 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 50 | ||
| Contigs |
|
||
| Total Sequence Length | 2,630,617 (bp) | ||
| GC Percentage | 63.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/796/055/GCA_005796055.1_ASM579605v1 | ||
| CDS | 2369 | ||
| Genes | 2449 | ||
| mRNA | 2449 | ||
| misc RNA | 23 | ||
| rRNA | 9 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.74 % | ||
| CheckM Completeness | 96.59 % | ||
| CheckM Contamination | 4.65 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM579605v1 |
| GenBank Assembly Accession | GCA_005796055.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005796055.1 [NCBI] |
| BioSample | SAMN11026534 [NCBI] |
| BioProject | PRJNA524452 [NCBI] |
| Submitter | ETH Zurich |
| Submission Date | 2019-02-27T04:14:03.863 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VBRS01 |
| NCBI TaxID | 33010 |
| Isolation Source | infant stool |
| Geo Location | Switzerland |
