Genome Meta Information: Hominimerdicola aceti KGMB03662 (GCA_005862145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005862145.1 | ||
| HOMD Taxon-ID | HMT-0962 | ||
| Species Name (in use by HOMD) | Hominimerdicola aceti | ||
| Organism Name (as deposited) | HMT-962 Hominimerdicola aceti KGMB03662 | ||
| Strain or Isolate | KGMB03662 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Hominimerdicola; s__Hominimerdicola aceti |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 376 | ||
| Contigs |
|
||
| Total Sequence Length | 2,707,502 (bp) | ||
| GC Percentage | 43.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/862/145/GCA_005862145.1_ASM586214v1 | ||
| CDS | 2453 | ||
| Genes | 2542 | ||
| mRNA | 2542 | ||
| misc RNA | 21 | ||
| rRNA | 14 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.39 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM586214v1 |
| GenBank Assembly Accession | GCA_005862145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005862145.1 [NCBI] |
| BioSample | SAMN11791796 [NCBI] |
| BioProject | PRJNA543941 [NCBI] |
| Submitter | Korea Research Institute of Bioscience and Biotechnology |
| Submission Date | 2019-05-21T00:46:03.800 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VCGV01 |
| NCBI TaxID | 2583230 |
| Isolation Source | feces |
| Geo Location | South Korea: Joengeup |
