Genome Meta Information: Treponema pallidum X-4 (GCA_005885795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005885795.1 | ||
| HOMD Taxon-ID | HMT-0805 | ||
| Species Name (in use by HOMD) | Treponema pallidum | ||
| Organism Name (as deposited) | HMT-805 Treponema pallidum X-4 | ||
| Strain or Isolate | X-4 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema; s__Treponema pallidum |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 4201 | ||
| Contigs |
|
||
| Total Sequence Length | 1,139,838 (bp) | ||
| GC Percentage | 52.79 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/885/795/GCA_005885795.1_ASM588579v1 | ||
| CDS | 978 | ||
| Genes | 1032 | ||
| mRNA | 1032 | ||
| misc RNA | 2 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 99.42 % | ||
| CheckM Contamination | 0.98 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM588579v1 |
| GenBank Assembly Accession | GCA_005885795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005885795.1 [NCBI] |
| BioSample | SAMN11812273 [NCBI] |
| BioProject | PRJNA544173 [NCBI] |
| Submitter | Zhongshan Hospital, Medical College of Xiamen University, Xiamen, China |
| Submission Date | 2019-05-22T05:30:03.746 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 161 |
| Isolation Source | missing |
| Geo Location | China: Xiamen |
