Genome Meta Information: Haemophilus aegyptius F1946 (GCA_005888265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005888265.1 | ||
| HOMD Taxon-ID | HMT-0535 | ||
| Species Name (in use by HOMD) | Haemophilus aegyptius | ||
| Organism Name (as deposited) | HMT-535 Haemophilus aegyptius F1946 | ||
| Strain or Isolate | F1946 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 1,957,726 (bp) | ||
| GC Percentage | 38.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/888/265/GCA_005888265.1_ASM588826v1 | ||
| CDS | 1946 | ||
| Genes | 2037 | ||
| mRNA | 2037 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.95 % | ||
| CheckM Completeness | 98.5 % | ||
| CheckM Contamination | 0.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM588826v1 |
| GenBank Assembly Accession | GCA_005888265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005888265.1 [NCBI] |
| BioSample | SAMN04115930 [NCBI] |
| BioProject | PRJNA297155 [NCBI] |
| Submitter | Institute of Biology - University of Campinas |
| Submission Date | 2015-09-28T09:16:17.033 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | LNKS01 |
| NCBI TaxID | 725 |
| Isolation Source | Skin lesion from a Brazilian Purpuric Fever case |
| Geo Location | Brazil: Sao Paulo, Promissao |
