Genome Meta Information: Streptococcus pseudopneumoniae BHN877 (GCA_005890605.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005890605.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae BHN877 | ||
| Strain or Isolate | BHN877 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,268,655 (bp) | ||
| GC Percentage | 39.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/890/605/GCA_005890605.1_ASM589060v1 | ||
| CDS | 2222 | ||
| Genes | 2344 | ||
| mRNA | 2344 | ||
| misc RNA | 71 | ||
| rRNA | 5 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.64 % | ||
| CheckM Completeness | 95.63 % | ||
| CheckM Contamination | 1.11 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM589060v1 |
| GenBank Assembly Accession | GCA_005890605.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005890605.1 [NCBI] |
| BioSample | SAMN11166140 [NCBI] |
| BioProject | PRJNA528011 [NCBI] |
| Submitter | Karolinska Institutet |
| Submission Date | 2019-03-19T10:38:03.903 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SOQS01 |
| NCBI TaxID | 257758 |
| Isolation Source | sputum |
| Geo Location | Spain |
