Genome Meta Information: Cutibacterium avidum T19584 (GCA_005937655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_005937655.1 | ||
| HOMD Taxon-ID | HMT-0552 | ||
| Species Name (in use by HOMD) | Cutibacterium avidum | ||
| Organism Name (as deposited) | HMT-552 Cutibacterium avidum T19584 | ||
| Strain or Isolate | T19584 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium avidum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 45 | ||
| Contigs |
|
||
| Total Sequence Length | 2,667,416 (bp) | ||
| GC Percentage | 63.33 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/937/655/GCA_005937655.1_ASM593765v1 | ||
| CDS | 2375 | ||
| Genes | 2456 | ||
| mRNA | 2456 | ||
| misc RNA | 28 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.46 % | ||
| CheckM Completeness | 90.2 % | ||
| CheckM Contamination | 6.28 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM593765v1 |
| GenBank Assembly Accession | GCA_005937655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_005937655.1 [NCBI] |
| BioSample | SAMN09289908 [NCBI] |
| BioProject | PRJNA474022 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2018-05-31T15:15:19.007 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QJIA01 |
| NCBI TaxID | 33010 |
| Isolation Source | Wound No. 1 Right PRESKIN |
| Geo Location | USA |
