Genome Meta Information: Streptococcus oralis 1643 (GCA_006228325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006228325.1 | ||
| HOMD Taxon-ID | HMT-0707 | ||
| Species Name (in use by HOMD) | Streptococcus oralis | ||
| Organism Name (as deposited) | HMT-707 Streptococcus oralis subsp. oralis 1643 | ||
| Strain or Isolate | 1643 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp006228325 |
||
| Sequencing Technology | Illumina HiSeq; PacBio RSII | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,898,954 (bp) | ||
| GC Percentage | 41.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/228/325/GCA_006228325.1_ASM622832v1 | ||
| CDS | 1835 | ||
| Genes | 1951 | ||
| mRNA | 1951 | ||
| misc RNA | 41 | ||
| rRNA | 12 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM622832v1 |
| GenBank Assembly Accession | GCA_006228325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006228325.1 [NCBI] |
| BioSample | SAMN06040852 [NCBI] |
| BioProject | PRJNA542100 [NCBI] |
| Submitter | The University of Texas at Dallas |
| Submission Date | 2016-11-18T15:45:03.630 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2576376 |
| Isolation Source | Infective endocarditits |
| Geo Location | USA |
