Genome Meta Information: Tannerella forsythia ATCC 43037 (GCA_006385365.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006385365.1 | ||
| HOMD Taxon-ID | HMT-0613 | ||
| Species Name (in use by HOMD) | Tannerella forsythia | ||
| Organism Name (as deposited) | HMT-613 Tannerella forsythia ATCC 43037 | ||
| Strain or Isolate | ATCC 43037 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Tannerella; s__Tannerella forsythia |
||
| Sequencing Technology | Illumina MiSeq; Illumina HiSeq | ||
| Genome Coverage | 990 | ||
| Contigs |
|
||
| Total Sequence Length | 3,296,274 (bp) | ||
| GC Percentage | 47.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/385/365/GCA_006385365.1_ASM638536v1 | ||
| CDS | 2750 | ||
| Genes | 2826 | ||
| mRNA | 2826 | ||
| misc RNA | 26 | ||
| rRNA | 5 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.03 % | ||
| CheckM Contamination | 2.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM638536v1 |
| GenBank Assembly Accession | GCA_006385365.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006385365.1 [NCBI] |
| BioSample | SAMN12058270 [NCBI] |
| BioProject | PRJNA548889 [NCBI] |
| Submitter | Universitaet fuer Bodenkultur Wien |
| Submission Date | 2019-06-14T09:36:04.670 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VFJI01 |
| NCBI TaxID | 28112 |
| Isolation Source | Human periodontal pocket |
| Geo Location | USA |
