Genome Meta Information: Actinomyces oris CCUG 34288 (GCA_006546825.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006546825.1 | ||
| HOMD Taxon-ID | HMT-893 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-893 Actinomyces oris clade-893 CCUG 34288 | ||
| Strain or Isolate | CCUG 34288 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces oris |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 913.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,168,954 (bp) | ||
| GC Percentage | 68.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/546/825/GCA_006546825.1_ASM654682v1 | ||
| CDS | 2596 | ||
| Genes | 2663 | ||
| mRNA | 2663 | ||
| misc RNA | 14 | ||
| rRNA | 3 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM654682v1 |
| GenBank Assembly Accession | GCA_006546825.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006546825.1 [NCBI] |
| BioSample | SAMN12142211 [NCBI] |
| BioProject | PRJNA305687 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-06-26T11:29:04.330 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VICC01 |
| NCBI TaxID | 544580 |
| Isolation Source | sputum |
| Geo Location | USA:New York |
