Genome Meta Information: Aggregatibacter actinomycetemcomitans SC1000 (GCA_006547285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006547285.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans SC1000 | ||
| Strain or Isolate | SC1000 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 40.4x | ||
| Contigs |
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| Total Sequence Length | 2,099,973 (bp) | ||
| GC Percentage | 44.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/547/285/GCA_006547285.1_ASM654728v1 | ||
| CDS | 2093 | ||
| Genes | 2211 | ||
| mRNA | 2211 | ||
| misc RNA | 60 | ||
| rRNA | 8 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.92 % | ||
| CheckM Completeness | 99.29 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.32 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM654728v1 |
| GenBank Assembly Accession | GCA_006547285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006547285.1 [NCBI] |
| BioSample | SAMN07138300 [NCBI] |
| BioProject | PRJNA387021 [NCBI] |
| Submitter | Bumgarner laboratory, Department of Microbiology, University of Washington |
| Submission Date | 2017-05-17T13:19:02.657 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | NHNH01 |
| NCBI TaxID | 714 |
| Isolation Source | |
| Geo Location | USA |
